Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
UVM | rs35884213 | chr12:9812401 | G/A | 0.000112 | 67 | 27.62 | 21.8 | 7.6 | KM Plot |
UVM | rs35920072 | chr15:40870109 | A/G | 0.000227 | 67 | 27.87 | 26.12 | 16.78 | KM Plot |
UVM | rs36094699 | chr15:40963121 | T/C | 1.93E-5 | 65 | 27.23 | 26.12 | 17.07 | KM Plot |
UVM | rs371365007 | chr12:9567279 | C/T | 0.000174 | 65 | 27.62 | 22.98 | 7.6 | KM Plot |
UVM | rs373507147 | chr12:9599179 | T/C | 0.000142 | 65 | 27.87 | 23.63 | 7.6 | KM Plot |
UVM | rs3743146 | chr15:40850049 | A/G | 0.000214 | 67 | 27.88 | 24.87 | 16.78 | KM Plot |
UVM | rs3751557 | chr15:29410238 | A/G | 7.26E-5 | 67 | 25.77 | 41.87 | 7.6 | KM Plot |
UVM | rs3751558 | chr15:29412402 | G/T | 7.26E-5 | 67 | 25.77 | 41.87 | 7.6 | KM Plot |
UVM | rs3765654 | chr1:74709711 | C/G | 0.000407 | 67 | 6.77 | 26.13 | 27.92 | KM Plot |
UVM | rs3797 | chr15:29412566 | A/G | 7.26E-5 | 67 | 25.77 | 41.87 | 7.6 | KM Plot |
UVM | rs3803353 | chr15:40857240 | G/A | 0.000227 | 67 | 27.87 | 26.12 | 16.78 | KM Plot |
UVM | rs3812919 | chr15:29414884 | C/T | 0.000116 | 64 | 25.32 | 41.87 | 7.6 | KM Plot |
UVM | rs3882941 | chr12:9599813 | A/G | 0.000142 | 66 | 7.6 | 23.63 | 27.62 | KM Plot |
UVM | rs3948117 | chr2:239024180 | C/T | 4.67E-5 | 67 | 1.18 | 24.6 | 27.37 | KM Plot |
UVM | rs41293108 | chr20:30414560 | C/G | 6.07E-5 | 67 | 27.9 | 14.23 | 7.6 | KM Plot |